Report for Sequence Feature Glyma18g03390
Feature Type: gene_model
Chromosome: Gm18
Start: 2294426
stop: 2297478
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g03390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G07310 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:2247775-2248833 REVERSE LENGTH=352
SoyBase E_val: 3.00E-40 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR22949 Panther
WHITE COLLAR 2 PROTEIN (WC2)
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_G7JB59 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BAHD acyltransferase DCR n=1 Tax=Medicago truncatula RepID=G7JB59_MEDTR
SoyBase E_val: 3.00E-91 ISS
UniRef100_I1MZ49 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ49_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g03390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g03390
Paralog Evidence Comments
Glyma11g34961 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g03390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g030000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g03390
Coding sequences of Glyma18g03390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g03390.2 sequence type=CDS gene model=Glyma18g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTAAGGAAAACAATAATAATTATATATTTAGTCAAAATTATCATCTGCTCCATTTTGCAGCGTACTGAAAGTTGCAAGCACACAGAAGAGAAGAGAAAGATGACGTCATCGCGTCCCCCTCCGTCGAAATCCGTGGATCTGGACCTAACAATCGTGTCGGCGAAGCACCTGAAGAACGTGAACTGGAAGAACGGCAATCTGAAACCCTACGTGGTTTTCTGGGTGGACCCGGAGCGGCGCCTCGCCACGAAATCCGACGACTCCGGCAACACCTCCCCCGTCTGGAACGAGCGTTTCGCCCTCCCTCTCCCTCTCCCCCTCCACGACTCCTTCCTCACCCTCGAGATCTTTCACTCCAAACCCTCCGACACCCCCAAACCCCTCGTCGCCACCCTCCGCCTCCCCCTCAAAGACCTCCACGACCTCCACGACTCCACGCGCCTCCGCAAGTTCCCCCTCTCTCGCCCCTCTGGCCGCCCCCACGGCAAGATCCACCTCAAACTCGGCCTCCTCGGCCGCCCCCAATTCGATTACGCCTCCCCCAACCCTAACCCTAACCCTAACCCTAGTCCTAATTTCGTCTGCTACAGAGGATACACCCCTTCCCCTTCCCATTCCCATTCTCACTCCCCTTCTCCACCACCTTCTCCTTACACCTCTTACACCGACTCCTATTCTGGTTACTACCCCGGTTACTATTCTGGCGCACCTCCCCCTCCCCCTCCTAGACCCTTCTTCGACCGTTACGCTGGGTCTAGTGGGCCTTCTGCTCCGCTTGATTACTCCTCCACTTATGACTCCAAGCCCAAGGCTCCCAAAATGGGCCTCGGCGCTGGCCTCGCCGTTGGCGCTGTTGCTGGGGCTCTCGGCGGGCTTGCTCTCGAAGAGGGGCTTAATTACGAAGAGGACAAAATCGCGGAGAGGGTTGAGAACGACGTCACTGCTGCTAATGTTGCTGCTGCGCGCGACAATTACAGCGATTACCGAGTGGATTATTGA
Predicted protein sequences of Glyma18g03390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g03390.2 sequence type=predicted peptide gene model=Glyma18g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVRKTIIIIYLVKIIICSILQRTESCKHTEEKRKMTSSRPPPSKSVDLDLTIVSAKHLKNVNWKNGNLKPYVVFWVDPERRLATKSDDSGNTSPVWNERFALPLPLPLHDSFLTLEIFHSKPSDTPKPLVATLRLPLKDLHDLHDSTRLRKFPLSRPSGRPHGKIHLKLGLLGRPQFDYASPNPNPNPNPSPNFVCYRGYTPSPSHSHSHSPSPPPSPYTSYTDSYSGYYPGYYSGAPPPPPPRPFFDRYAGSSGPSAPLDYSSTYDSKPKAPKMGLGAGLAVGAVAGALGGLALEEGLNYEEDKIAERVENDVTAANVAAARDNYSDYRVDY*